These fudgy protein brownies are soft, dense, and packed with real chocolate flavor. They’re made with Greek yogurt, cocoa powder, peanut butter, and a scoop of protein powder to create a high protein snack. This easy recipe checks all the boxes for protein desserts, healthy protein treats, and simple post-workout snacks you can prep in under an hour.
Protein brownies usually fail in one of two ways. They either taste dry or feel chalky. I’ve worked through both problems here.

The first trick is balance. Greek yogurt and applesauce keep the crumb moist, while almond flour creates structure without drying the batter. Cocoa powder adds intensity, not just color. The ratio of wet to dry ingredients matters more than most think.
These are dense but not gummy. Rich, but still light enough for a midday bite. You get full satisfaction without the sugar crash. I’ve made protein bites that leaned more cake than brownie, and these aren’t that. This is the brownie texture people actually crave.
Try one alongside a square of my Protein Cottage Cheese Brownies for a contrast in flavor and texture.
The Cocoa and Protein Powder Balance

Cocoa and protein powder fight for dominance. If you’ve baked with whey before, you know how easy it is to tip into dry or rubbery. I keep the cocoa at ½ cup and the protein powder lower, around ¼ cup.
That’s enough to hit the protein goal without throwing off the texture. Chocolate whey gives a deeper base. Plant-based protein works too, though it tends to make the texture slightly more cake-like.
A little espresso powder helps round out the chocolate flavor without making it taste like coffee. If you have it, use it.
These are also a good pairing with my Chocolate Protein Mug Cake if you’re looking for a single-serve alternative.
Ingredient Spotlight: Greek Yogurt

Greek yogurt adds moisture, protein, and that subtle tang that balances the sweetness. I’ve tried these with coconut yogurt too, and the result is softer and a little richer.
It’s important to use full-fat or at least 2%. The extra fat makes a difference in texture. Fat-free tends to make the crumb more rubbery, especially once the protein powder sets.
The other bonus? Yogurt reacts with the baking soda, so you don’t need as much leavening. The lift stays controlled, which helps keep the center dense.
If you’re already using yogurt in breakfast recipes, try it again in my Dark Chocolate Oatmeal Cups for another high protein snack idea.
Ingredient Choices That Matter
Applesauce takes the place of oil. It softens the batter and supports the structure without making it greasy. You won’t taste it, but you’ll notice the difference if you skip it.
Peanut butter adds richness and binding power. Almond butter works if you want a more subtle taste, but peanut gives the most depth. I’ve even tested with hazelnut butter once. It was good, but lost the classic brownie profile.
Coconut sugar adds gentle sweetness and a more rounded flavor than stevia or erythritol. But you can swap in brown sugar substitute if needed. Just watch for aftertaste in some brands.
You’ll find the same balance in my Healthy Hot Chocolate, which uses similar ingredients in a drinkable format.
Bake Time and Texture Cues

The batter should feel thick, smooth, and slightly glossy before baking. Spread it evenly with a spatula. Don’t tap the pan on the counter too hard or it’ll pack the air out.
Bake for 18 to 22 minutes. You want the center just set, but still soft. A toothpick should come out with moist crumbs, not raw batter and not bone-dry. Fudgy means slightly under, not gooey.
Once out of the oven, let it cool in the pan. That part matters. Cutting too early will drag the center out with the knife.
Storage and Meal Prep Notes
These keep well in the fridge for up to a week. Store them in a sealed container with parchment between layers.
They also freeze well. Wrap squares individually and freeze up to two months. Thaw at room temperature or microwave in 15-second bursts.
Over time, they stay chewy. I’ve had some get even denser after chilling. If that’s your thing, keep them cold.
Tips From My Test Batches
Use parchment to avoid sticking and get clean corners. Avoid overmixing once the protein powder goes in. That’s where gumminess starts.
Let the brownies cool before slicing. The center will feel soft at first but firms up as it rests.
Sprinkle a few chocolate chips on top before baking. It gives a glossy finish and just enough melt on the surface.
Try baking these in muffin cups for grab-and-go high protein snacks. Just reduce the bake time by 3 to 5 minutes.
Save This Recipe and Share Your Version

Save this recipe on Pinterest so you always have a protein dessert ready. I’d love to hear what tweaks you try. Share in the comments if you added walnuts, swapped the flour, or used a different protein powder.
Let’s build a space where healthy dessert doesn’t mean boring.
Fudgy Protein Brownies Recipe
These Fudgy Protein Brownies are dense, rich, and packed with flavor. Made for those who want high protein snacks without sacrificing taste, this simple recipe blends chocolatey goodness with clean ingredients. Ideal as protein desserts or healthy snacks, they deliver a satisfying bite with less guilt. Each square is a perfect solution for post-workout protein bites or afternoon protein snacks. Add these healthy protein desserts to your routine for a fuss-free way to fuel your body.
Ingredients
- 1/2 cup (120g) plain Greek yogurt (or dairy-free yogurt)
- 1/4 cup (60g) unsweetened applesauce
- 2 large eggs
- 1/4 cup (60ml) brewed coffee or milk
- 1/3 cup (80g) natural peanut butter or almond butter
- 1/2 cup (100g) coconut sugar or brown sugar substitute
- 1/2 cup (45g) unsweetened cocoa powder
- 1/4 cup (25g) chocolate whey protein powder (or plant-based protein)
- 1/4 cup (30g) almond flour (or oat flour)
- 1/2 teaspoon baking soda
- 1/4 teaspoon salt
- 1/3 cup (60g) dark chocolate chips or chunks
- FOR THE OPTIONAL ADD-INS:
- 1/4 teaspoon espresso powder
- 1/4 teaspoon vanilla extract
- Pinch of cinnamon
Instructions
- PREHEAT THE OVEN: Set the oven to 350°F (175°C). Line an 8x8-inch baking pan with parchment paper or lightly grease it to prevent sticking.
- MIX THE WET INGREDIENTS: In a large mixing bowl, whisk together the Greek yogurt, unsweetened applesauce, eggs, brewed coffee or milk, and peanut butter until smooth and fully combined.
- ADD THE SUGAR AND COCOA POWDER: Stir in the coconut sugar and unsweetened cocoa powder. Mix well until the batter is thick and uniform, scraping down the sides as needed.
- INCORPORATE THE DRY INGREDIENTS: Add the chocolate protein powder, almond flour, baking soda, salt, and any optional add-ins like espresso powder, vanilla extract, or cinnamon. Stir until the mixture is thick and smooth.
- FOLD IN THE CHOCOLATE: Gently fold in the dark chocolate chips or chunks, reserving a few to sprinkle on top before baking.
- BAKE: Pour the batter into the prepared pan and spread it evenly. Bake for 18–22 minutes, or until the center is just set and a toothpick comes out with moist crumbs. Avoid overbaking to maintain a fudgy texture.
- COOL AND SLICE: Allow the brownies to cool in the pan for at least 15–20 minutes. Once set, slice into squares and serve.
Notes
For the best texture, avoid overmixing the batter once the protein powder is added. Brownies will continue to set as they cool. Store leftovers in an airtight container at room temperature for up to 3 days, or refrigerate for up to a week.
Nutrition Information
Yield
9Serving Size
1Amount Per Serving Calories 341Total Fat 20gSaturated Fat 4gUnsaturated Fat 15gCholesterol 46mgSodium 330mgCarbohydrates 30gFiber 6gSugar 11gProtein 12g
